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Single-event IPCW

Functions for IPCW analysis of single-event survival data, including data simulation, weight estimation, weighted Cox regression, and weighted Kaplan-Meier curves.

sim_data_se()
Simulate single-event survival data with informative censoring
get_ipcw_wgt_se()
Compute IPCW weights for single-event survival data
get_ipcw_cox_fit_se()
Fit an IPCW-weighted Cox proportional hazards model
get_ipcw_km_prob_x_se()
Estimate IPCW Kaplan-Meier survival probabilities by covariate
get_cox_fit_se()
Fit a standard (unweighted) Cox proportional hazards model
get_boot_var_se()
Compute bootstrap variance of the log hazard ratio
get_boot_pci_se()
Compute bootstrap percentile confidence interval for the log hazard ratio
get_ipcw_boot_se()
Bootstrap IPCW weighted data for single-event survival analysis
plot_ipcw_km_boot_ci_se()
Plot IPCW Kaplan-Meier curves with bootstrap percentile confidence intervals
cox_boot_lhr
Bootstrap log hazard ratios from IPCW Cox models

Competing-risks IPCW

Functions for IPCW analysis of competing risks data, including weight estimation, cumulative incidence estimation, and Fine-Gray regression.

sim_data_cr()
Simulate competing risks survival data
wide_to_long_cr()
Convert wide competing risks data to long (counting-process) format
add_ipcw_weights_cr()
Add IPCW weights to competing risks long-format data
cuminc_naive_cr()
Naive (unweighted) cumulative incidence estimate
cuminc_waverage_cr()
Weighted-average (non-parametric) IPCW cumulative incidence estimate
cuminc_ipcw_cr()
Cox model IPCW cumulative incidence estimate
fg_split_cr()
Prepare long-format data for Fine-Gray regression
add_fg_weights_cr()
Add Fine-Gray weights to Fine-Gray split data
fg_naive_cr()
Naive Fine-Gray sub-distribution hazard regression
fg_weighted_cr()
FG-weighted Fine-Gray sub-distribution hazard regression
get_ipcw_boot_cr()
Bootstrap IPCW weighted data for competing risks survival analysis
get_boot_pci_cr()
Compute bootstrap percentile confidence intervals for competing risks estimates
plot_ipcw_cuminc_boot_ci_cr()
Plot IPCW cumulative incidence with bootstrap percentile confidence intervals
fg_strat_boot
Bootstrap Fine-Gray coefficients from stratified FG weights